Variant report

Variant	rs9470415
Chromosome Location	chr6:36806926-36806927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36759479..36761835-chr6:36805392..36807104,2	MCF-7	breast:
2	chr6:36803997..36809047-chr6:36852852..36856509,4	K562	blood:
3	chr6:36804882..36807604-chr6:36813482..36815194,2	MCF-7	breast:
4	chr6:36804125..36807562-chr6:36952553..36955386,3	K562	blood:
5	chr6:36804125..36806992-chr6:36952553..36954934,2	K562	blood:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000198663	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10214861	1.00[EUR][1000 genomes]
rs11969196	1.00[EUR][1000 genomes]
rs11969791	1.00[EUR][1000 genomes]
rs236378	1.00[EUR][1000 genomes]
rs236379	0.86[EUR][1000 genomes]
rs36039991	1.00[EUR][1000 genomes]
rs41272190	1.00[EUR][1000 genomes]
rs58806396	1.00[EUR][1000 genomes]
rs7744324	1.00[EUR][1000 genomes]
rs7747806	1.00[EUR][1000 genomes]
rs7767776	1.00[EUR][1000 genomes]
rs9462221	1.00[EUR][1000 genomes]
rs9462228	1.00[EUR][1000 genomes]
rs9470400	1.00[EUR][1000 genomes]
rs9470406	1.00[EUR][1000 genomes]
rs9470409	1.00[EUR][1000 genomes]
rs9470410	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5262	chr6:36799329-36826210	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv3421891	chr6:36806599-36809147	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36804000-36807000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:36804000-36808200	Active TSS	Brain Anterior Caudate	brain
3	chr6:36805200-36807200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr6:36805800-36807000	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr6:36806000-36808000	Active TSS	Left Ventricle	heart
6	chr6:36806200-36808200	Active TSS	Brain Angular Gyrus	brain
7	chr6:36806200-36808400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:36806400-36807000	Flanking Active TSS	Fetal Heart	heart
9	chr6:36806400-36807000	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
10	chr6:36806400-36807400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
11	chr6:36806600-36807000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr6:36806600-36807000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
13	chr6:36806600-36807000	Bivalent Enhancer	Primary T cells from cord blood	blood
14	chr6:36806600-36807000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
15	chr6:36806600-36807000	Bivalent Enhancer	Adipose Nuclei	Adipose
16	chr6:36806600-36807000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
17	chr6:36806600-36807000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
18	chr6:36806600-36807000	Flanking Active TSS	Fetal Brain Female	brain
19	chr6:36806600-36807000	Bivalent Enhancer	Fetal Lung	lung
20	chr6:36806600-36807000	Enhancers	Gastric	stomach
21	chr6:36806600-36807200	Bivalent Enhancer	Stomach Mucosa	stomach
22	chr6:36806600-36807400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
23	chr6:36806600-36807400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
24	chr6:36806600-36807600	Enhancers	Lung	lung
25	chr6:36806600-36808000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
26	chr6:36806600-36808200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr6:36806600-36808200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
28	chr6:36806600-36808400	Bivalent/Poised TSS	Fetal Kidney	kidney
29	chr6:36806600-36809000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
30	chr6:36806600-36809000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
31	chr6:36806600-36809000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
32	chr6:36806600-36809000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr6:36806600-36809000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr6:36806600-36809000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:36806800-36807000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:36806800-36807000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:36806800-36807000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:36806800-36807000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
39	chr6:36806800-36807000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
40	chr6:36806800-36807000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
41	chr6:36806800-36807000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:36806800-36807000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
43	chr6:36806800-36807000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
44	chr6:36806800-36807000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:36806800-36807000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:36806800-36807000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:36806800-36807000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:36806800-36807000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
49	chr6:36806800-36807000	Bivalent Enhancer	Esophagus	oesophagus
50	chr6:36806800-36807000	Enhancers	Fetal Brain Male	brain

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