Variant report

Variant	rs58806396
Chromosome Location	chr6:36778922-36778923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36773345..36779007-chr6:36781700..36788311,6	K562	blood:
2	chr6:36769485..36774936-chr6:36775864..36780694,5	K562	blood:
3	chr6:36778233..36779348-chr6:36818667..36819792,5	MCF-7	breast:
4	chr6:36777747..36780393-chr6:36794218..36796370,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10214861	1.00[EUR][1000 genomes]
rs11969196	1.00[EUR][1000 genomes]
rs11969791	1.00[EUR][1000 genomes]
rs236378	1.00[EUR][1000 genomes]
rs236379	0.86[EUR][1000 genomes]
rs36039991	1.00[EUR][1000 genomes]
rs41272190	1.00[EUR][1000 genomes]
rs7744324	1.00[EUR][1000 genomes]
rs7747806	1.00[EUR][1000 genomes]
rs7767776	1.00[EUR][1000 genomes]
rs9462221	1.00[EUR][1000 genomes]
rs9462228	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470400	1.00[EUR][1000 genomes]
rs9470406	1.00[EUR][1000 genomes]
rs9470409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470410	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36762600-36789600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:36774000-36785200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:36774200-36788600	Weak transcription	Fetal Intestine Small	intestine
4	chr6:36777000-36797800	Weak transcription	Pancreas	Pancrea
5	chr6:36777200-36779200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:36777800-36779000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:36777800-36779400	Enhancers	Fetal Muscle Leg	muscle
8	chr6:36778000-36779200	Enhancers	Fetal Heart	heart
9	chr6:36778000-36779200	Enhancers	Fetal Muscle Trunk	muscle
10	chr6:36778200-36779800	Enhancers	Adipose Nuclei	Adipose
11	chr6:36778400-36779000	Enhancers	Fetal Stomach	stomach
12	chr6:36778400-36779000	Enhancers	Left Ventricle	heart
13	chr6:36778400-36779000	Flanking Bivalent TSS/Enh	HepG2	liver
14	chr6:36778400-36779000	Enhancers	HUVEC	blood vessel
15	chr6:36778400-36779200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:36778400-36779200	Enhancers	Brain Anterior Caudate	brain
17	chr6:36778400-36779200	Enhancers	Right Ventricle	heart
18	chr6:36778400-36779400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:36778600-36779000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:36778600-36779400	Enhancers	Fetal Brain Female	brain
21	chr6:36778600-36779400	Enhancers	Right Atrium	heart
22	chr6:36778600-36784000	Weak transcription	HMEC	breast
23	chr6:36778800-36779000	Enhancers	Brain Germinal Matrix	brain
24	chr6:36778800-36779000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:36778800-36779200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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