Variant report

Variant	rs9470400
Chromosome Location	chr6:36769715-36769716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10214861	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1059234	1.00[CEU][hapmap]
rs11964420	1.00[CEU][hapmap]
rs11967202	1.00[CEU][hapmap]
rs11967728	1.00[CEU][hapmap]
rs11969196	1.00[EUR][1000 genomes]
rs11969791	1.00[EUR][1000 genomes]
rs12528248	1.00[CEU][hapmap]
rs236378	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs236379	0.86[EUR][1000 genomes]
rs36039991	1.00[EUR][1000 genomes]
rs41272190	1.00[EUR][1000 genomes]
rs58806396	1.00[EUR][1000 genomes]
rs6916443	1.00[CEU][hapmap]
rs7744324	1.00[EUR][1000 genomes]
rs7747806	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7757749	1.00[CEU][hapmap]
rs7761648	1.00[CEU][hapmap]
rs7767776	1.00[EUR][1000 genomes]
rs876581	1.00[CEU][hapmap]
rs9462221	1.00[EUR][1000 genomes]
rs9462228	1.00[EUR][1000 genomes]
rs9470406	1.00[EUR][1000 genomes]
rs9470409	1.00[EUR][1000 genomes]
rs9470410	1.00[EUR][1000 genomes]
rs9470415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36762000-36772200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:36762000-36772800	Weak transcription	Fetal Brain Female	brain
3	chr6:36762400-36772200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:36762600-36771000	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:36762600-36773000	Weak transcription	Right Ventricle	heart
6	chr6:36762600-36789600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:36762800-36772600	Weak transcription	Brain Anterior Caudate	brain
8	chr6:36762800-36772600	Weak transcription	HUVEC	blood vessel
9	chr6:36763600-36771600	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:36764400-36773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:36767800-36773000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:36768800-36770000	Weak transcription	Fetal Stomach	stomach
13	chr6:36768800-36778600	Weak transcription	Right Atrium	heart
14	chr6:36769000-36772400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:36769000-36772600	Weak transcription	Brain Germinal Matrix	brain
16	chr6:36769200-36773000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:36769200-36773800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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