Variant report

Variant	rs3181251
Chromosome Location	chr14:24805824-24805825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24796718..24800207-chr14:24803965..24807105,3	MCF-7	breast:
2	chr14:24789439..24822082-chr14:24898039..24913135,99	MCF-7	breast:
3	chr14:24791358..24808812-chr14:24895309..24913599,55	K562	blood:
4	chr14:24781460..24810019-chr14:24892340..24914262,110	MCF-7	breast:
5	chr14:24805754..24808104-chr14:24833773..24836418,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100445	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000100441	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10459527	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1109152	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1109153	0.96[ASN][1000 genomes]
rs12050389	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12433338	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12436194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12436417	0.96[ASN][1000 genomes]
rs12881276	0.82[ASN][1000 genomes]
rs17184689	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2295300	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2332325	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28457795	0.80[ASN][1000 genomes]
rs2877642	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3212242	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3212243	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3212260	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8008406	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8014112	0.82[ASN][1000 genomes]
rs882726	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv564060	chr14:24776401-24809795	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3181251	LTB4R	cis	Thyroid	GTEx

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24804200-24806200	Weak transcription	Esophagus	oesophagus
2	chr14:24804400-24806000	Enhancers	Primary hematopoietic stem cells	blood
3	chr14:24804400-24806200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:24804400-24807800	Weak transcription	Pancreas	Pancrea
5	chr14:24804600-24806000	Enhancers	Placenta	Placenta
6	chr14:24804600-24806200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:24804600-24806200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:24804600-24806800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:24804600-24807200	Weak transcription	Right Atrium	heart
10	chr14:24804600-24807400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr14:24804600-24808000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
12	chr14:24804600-24808200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:24804800-24806000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:24804800-24806200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:24804800-24807800	Bivalent Enhancer	HepG2	liver
16	chr14:24804800-24808000	Weak transcription	Liver	Liver
17	chr14:24805000-24807400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr14:24805000-24807800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:24805000-24807800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:24805000-24807800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr14:24805000-24808000	Weak transcription	Small Intestine	intestine
22	chr14:24805200-24806800	Strong transcription	Gastric	stomach
23	chr14:24805200-24807000	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr14:24805200-24807400	Genic enhancers	Primary B cells from cord blood	blood
25	chr14:24805200-24807400	Weak transcription	Adipose Nuclei	Adipose
26	chr14:24805200-24807600	Strong transcription	Primary B cells from peripheral blood	blood
27	chr14:24805200-24807800	Weak transcription	Right Ventricle	heart
28	chr14:24805400-24806000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:24805400-24806000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr14:24805400-24807200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr14:24805400-24807400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr14:24805400-24807400	Strong transcription	Colonic Mucosa	Colon
33	chr14:24805400-24807400	Strong transcription	Duodenum Mucosa	Duodenum
34	chr14:24805400-24807600	Strong transcription	Primary T cells from cord blood	blood
35	chr14:24805400-24807600	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr14:24805400-24808200	Weak transcription	Osteobl	bone
37	chr14:24805400-24808400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:24805600-24806000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr14:24805600-24806400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr14:24805600-24806400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:24805600-24806400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:24805600-24806400	Weak transcription	Stomach Mucosa	stomach
43	chr14:24805600-24807000	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr14:24805600-24807600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:24805600-24807600	Genic enhancers	Primary monocytes fromperipheralblood	blood
46	chr14:24805600-24807800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr14:24805600-24807800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr14:24805600-24808200	Strong transcription	Fetal Intestine Small	intestine
49	chr14:24805600-24808400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:24805800-24807200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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