Variant report

Variant	rs3184648
Chromosome Location	chr3:141464146-141464147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141460791..141464587-chr3:141594120..141597016,3	MCF-7	breast:
2	chr3:141460404..141464291-chr3:141593804..141597029,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069849	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16851736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195442	0.82[ASW][hapmap];0.90[LWK][hapmap];0.82[AFR][1000 genomes]
rs17787778	0.82[AFR][1000 genomes]
rs73226648	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv877552	chr3:141420562-141466147	Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141458200-141470400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:141458600-141468000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:141458800-141470800	Weak transcription	Stomach Mucosa	stomach
4	chr3:141459000-141465600	Weak transcription	Lung	lung
5	chr3:141459000-141465800	Weak transcription	Gastric	stomach
6	chr3:141459600-141464200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:141459600-141470800	Weak transcription	Fetal Brain Male	brain
8	chr3:141460000-141467000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:141460200-141466000	Weak transcription	Ovary	ovary
10	chr3:141460200-141466400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:141460200-141468000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:141460200-141468200	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:141460200-141469800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:141460400-141465800	Weak transcription	Aorta	Aorta
15	chr3:141460400-141465800	Weak transcription	Psoas Muscle	Psoas
16	chr3:141460400-141466000	Weak transcription	Small Intestine	intestine
17	chr3:141460400-141472400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr3:141460800-141466000	Strong transcription	K562	blood
19	chr3:141460800-141470400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:141461000-141471600	Strong transcription	Fetal Thymus	thymus
21	chr3:141461200-141464600	Strong transcription	HSMM	muscle
22	chr3:141461200-141470000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:141461400-141466400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:141461400-141466800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:141461400-141467000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:141461400-141467200	Strong transcription	Osteobl	bone
27	chr3:141461400-141467600	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr3:141461400-141469400	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:141461400-141469600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:141461400-141469600	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr3:141461400-141470000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr3:141461400-141470000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:141461400-141470000	Strong transcription	Placenta	Placenta
34	chr3:141461400-141471800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr3:141461600-141466600	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr3:141461600-141467200	Strong transcription	NH-A	brain
37	chr3:141461600-141467400	Strong transcription	Primary B cells from peripheral blood	blood
38	chr3:141461600-141471400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:141461800-141465800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:141461800-141467400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:141461800-141498200	Weak transcription	Right Ventricle	heart
42	chr3:141462000-141469800	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr3:141462200-141464800	Strong transcription	NHEK	skin
44	chr3:141462200-141465800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr3:141462200-141467000	Strong transcription	Hela-S3	cervix
46	chr3:141462200-141467400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:141462200-141469600	Strong transcription	Dnd41	blood
48	chr3:141462200-141470800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:141462200-141473200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr3:141462400-141465200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links