Variant report
| Variant | rs73226648 |
|---|---|
| Chromosome Location | chr3:141444584-141444585 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000114125 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1467203 | 1.00[ASN][1000 genomes] |
| rs16851858 | 1.00[ASN][1000 genomes] |
| rs17195414 | 1.00[ASN][1000 genomes] |
| rs17195442 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17787730 | 1.00[ASN][1000 genomes] |
| rs17787754 | 1.00[ASN][1000 genomes] |
| rs17787778 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs3184648 | 0.82[AFR][1000 genomes] |
| rs6782796 | 0.95[EUR][1000 genomes] |
| rs6794262 | 0.95[EUR][1000 genomes] |
| rs73226607 | 1.00[ASN][1000 genomes] |
| rs73226649 | 0.95[EUR][1000 genomes] |
| rs73226653 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73226655 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73239714 | 1.00[ASN][1000 genomes] |
| rs7611234 | 1.00[ASN][1000 genomes] |
| rs953265 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949709 | chr3:141295050-142178144 | Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 2 | esv34073 | chr3:141395818-141448774 | Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv877552 | chr3:141420562-141466147 | Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
