Variant report

Variant	rs17787754
Chromosome Location	chr3:141375837-141375838
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13089727	1.00[YRI][hapmap]
rs1467203	1.00[ASN][1000 genomes]
rs16851858	1.00[ASN][1000 genomes]
rs17195414	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787730	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226607	1.00[ASN][1000 genomes]
rs73226648	1.00[ASN][1000 genomes]
rs73226653	1.00[ASN][1000 genomes]
rs73226655	1.00[ASN][1000 genomes]
rs73239714	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611234	1.00[ASN][1000 genomes]
rs953265	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv524429	chr3:141372391-141377330	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141364400-141377600	Weak transcription	Aorta	Aorta
2	chr3:141372000-141376000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:141374200-141376200	Enhancers	K562	blood
4	chr3:141374400-141376400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:141374400-141376400	Enhancers	NHDF-Ad	bronchial
6	chr3:141374600-141376000	Weak transcription	Placenta	Placenta
7	chr3:141375000-141376200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:141375000-141376200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:141375000-141376400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:141375000-141376400	Enhancers	Colon Smooth Muscle	Colon
11	chr3:141375200-141376400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:141375200-141376800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:141375400-141376200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:141375600-141376000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:141375600-141376000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:141375600-141376000	Enhancers	Osteobl	bone
17	chr3:141375800-141376000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:141375800-141376000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:141375800-141376800	ZNF genes & repeats	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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