Variant report

Variant	rs17195414
Chromosome Location	chr3:141377091-141377092
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13089727	1.00[YRI][hapmap]
rs1467203	1.00[ASN][1000 genomes]
rs16851858	1.00[ASN][1000 genomes]
rs17787730	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787754	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226607	1.00[ASN][1000 genomes]
rs73226648	1.00[ASN][1000 genomes]
rs73226653	1.00[ASN][1000 genomes]
rs73226655	1.00[ASN][1000 genomes]
rs73239714	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611234	1.00[ASN][1000 genomes]
rs953265	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv524429	chr3:141372391-141377330	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141364400-141377600	Weak transcription	Aorta	Aorta
2	chr3:141376000-141377200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:141376200-141378200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:141376400-141377200	Weak transcription	Placenta	Placenta
5	chr3:141376400-141377600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:141376400-141377600	Flanking Active TSS	Colon Smooth Muscle	Colon
7	chr3:141376800-141377200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:141376800-141377200	Active TSS	Rectal Smooth Muscle	rectum
9	chr3:141377000-141377800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
10	chr3:141377000-141378400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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