Variant report

Variant	rs1467203
Chromosome Location	chr3:141401537-141401538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141401510..141403394-chr3:141404360..141406042,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16851858	1.00[ASN][1000 genomes]
rs17195414	1.00[ASN][1000 genomes]
rs17787730	1.00[ASN][1000 genomes]
rs17787754	1.00[ASN][1000 genomes]
rs73226607	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226648	1.00[ASN][1000 genomes]
rs73226653	1.00[ASN][1000 genomes]
rs73226655	1.00[ASN][1000 genomes]
rs73239714	1.00[ASN][1000 genomes]
rs7611234	1.00[ASN][1000 genomes]
rs953265	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv34073	chr3:141395818-141448774	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141395400-141401800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:141398400-141405400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:141398600-141401600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:141398600-141401800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:141398600-141401800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:141398800-141401800	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:141399200-141401600	Enhancers	HMEC	breast
8	chr3:141399400-141401600	Enhancers	NHEK	skin
9	chr3:141399400-141401800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:141399400-141402200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr3:141399400-141402200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr3:141399600-141401600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:141399600-141401600	Enhancers	K562	blood
14	chr3:141399600-141402200	Enhancers	Spleen	Spleen
15	chr3:141399800-141402000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:141400000-141401600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:141400000-141402800	Enhancers	Fetal Muscle Trunk	muscle
18	chr3:141400200-141402400	Enhancers	Lung	lung
19	chr3:141400200-141405400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:141400400-141401800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr3:141400400-141401800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:141400400-141401800	Enhancers	HUVEC	blood vessel
23	chr3:141400400-141403400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:141400400-141403400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:141400400-141403600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr3:141400400-141405000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:141400400-141405000	Weak transcription	Hela-S3	cervix
28	chr3:141400400-141405200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr3:141400400-141405200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:141400400-141405200	Weak transcription	Brain Angular Gyrus	brain
31	chr3:141400600-141403600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr3:141400600-141404800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr3:141400600-141405000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:141400600-141405000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr3:141400600-141405000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:141400600-141405000	Weak transcription	HSMM	muscle
37	chr3:141400600-141405200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:141400600-141405200	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr3:141400600-141405200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr3:141400600-141405400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr3:141400600-141405600	Weak transcription	Pancreas	Pancrea
42	chr3:141400600-141415000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr3:141400800-141403400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr3:141400800-141403400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr3:141400800-141403400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr3:141400800-141405000	Weak transcription	Adipose Nuclei	Adipose
47	chr3:141400800-141405200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:141401000-141402200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr3:141401000-141402400	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr3:141401000-141405000	Weak transcription	Dnd41	blood

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