Variant report

Variant	rs16851858
Chromosome Location	chr3:141561314-141561315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1467203	1.00[ASN][1000 genomes]
rs17195414	1.00[ASN][1000 genomes]
rs17787754	1.00[ASN][1000 genomes]
rs2862121	1.00[ASN][1000 genomes]
rs73226607	1.00[ASN][1000 genomes]
rs73226648	1.00[ASN][1000 genomes]
rs73226653	1.00[ASN][1000 genomes]
rs73226655	1.00[ASN][1000 genomes]
rs73239714	1.00[ASN][1000 genomes]
rs953265	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141549800-141564400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:141550800-141571800	Weak transcription	Esophagus	oesophagus
3	chr3:141553000-141562600	Weak transcription	K562	blood
4	chr3:141560200-141564400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:141560200-141564600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:141560200-141568200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:141560600-141561600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:141560600-141562800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:141560600-141563000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:141560600-141564400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:141560600-141564600	Weak transcription	Hela-S3	cervix
12	chr3:141560600-141572600	Weak transcription	Spleen	Spleen
13	chr3:141561200-141562800	Weak transcription	NHEK	skin
14	chr3:141561200-141564200	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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