Variant report

Variant	rs320700
Chromosome Location	chr7:137049477-137049478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10954580	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11766321	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12530512	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12534625	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12538697	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12540417	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13222414	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13230189	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13234894	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13236574	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1647181	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16874961	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17529963	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17530005	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2241443	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2278829	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2351137	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2351138	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs320688	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs320698	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs320701	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34997884	0.81[AMR][1000 genomes]
rs3735025	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3735026	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4283969	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4518583	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4613918	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4728408	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4732253	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs728054	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7776538	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7779548	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7785663	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7804988	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs980796	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs983708	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv889242	chr7:137005808-137081223	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs320700	AC078842.3	cis	Thyroid	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137049400-137050000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links