Variant report

Variant	rs320991
Chromosome Location	chrX:77532625-77532626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2284753	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs321007	0.88[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv532880	chrX:77085352-77769755	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv916078	chrX:77450503-77541531	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv492122	chrX:77450503-77664330	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:77519000-77535000	Weak transcription	Primary B cells from cord blood	blood
2	chrX:77526000-77546200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chrX:77526200-77535200	Weak transcription	Primary hematopoietic stem cells	blood
4	chrX:77526400-77536800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chrX:77526600-77535200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chrX:77527800-77534800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chrX:77529200-77535000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chrX:77529800-77534800	Weak transcription	Primary B cells from peripheral blood	blood
9	chrX:77531600-77535800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chrX:77532600-77533000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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