Variant report

Variant	rs321007
Chromosome Location	chrX:77569212-77569213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2284753	0.88[ASW][hapmap];0.82[CEU][hapmap];0.88[CHB][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs320991	0.88[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv532880	chrX:77085352-77769755	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv492122	chrX:77450503-77664330	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:77558600-77576600	Weak transcription	Primary B cells from cord blood	blood
2	chrX:77558800-77570000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chrX:77559800-77576400	Weak transcription	Primary hematopoietic stem cells	blood
4	chrX:77567000-77569400	Weak transcription	Primary B cells from peripheral blood	blood
5	chrX:77568000-77569400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chrX:77568000-77571600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chrX:77568800-77569600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chrX:77569000-77571200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chrX:77569000-77573600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chrX:77569200-77572000	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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