Variant report

Variant	rs3211886
Chromosome Location	chr7:80289439-80289440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80288156..80289657-chr7:80291382..80293831,2	K562	blood:

Variant related genes	Relation type
ENSG00000229436	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10216184	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10240336	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10247260	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10261849	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10261980	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10265215	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10265457	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10265780	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10268340	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10268404	0.88[CEU][hapmap]
rs10268417	0.88[CEU][hapmap]
rs10275699	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532196	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12667404	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12706916	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13222488	0.88[EUR][1000 genomes]
rs13225492	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13228738	0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13244883	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1464792	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1524596	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1722506	0.88[CEU][hapmap]
rs1722507	0.88[CEU][hapmap]
rs17263407	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1761663	0.88[CEU][hapmap]
rs1949818	0.88[CEU][hapmap]
rs1953300	0.85[EUR][1000 genomes]
rs1984112	0.91[EUR][1000 genomes]
rs2030710	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2030711	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2065666	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2065668	0.83[EUR][1000 genomes]
rs2151916	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28369066	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28600997	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28645928	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3173800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3211816	1.00[CEU][hapmap];0.83[YRI][hapmap];0.99[EUR][1000 genomes]
rs3211820	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs3211822	0.92[CEU][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs3211827	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3211834	0.92[CEU][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs3211871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34493313	0.92[EUR][1000 genomes]
rs34801616	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35503056	0.80[EUR][1000 genomes]
rs62461673	0.88[EUR][1000 genomes]
rs62461690	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62461693	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62461695	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62461724	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6968407	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs6969989	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6972923	0.88[CEU][hapmap]
rs6973242	0.96[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs7784648	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7789369	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7795092	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7806711	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7807445	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs997906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv888529	chr7:80252518-80295701	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv888533	chr7:80272568-80289765	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv888535	chr7:80277632-80303350	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv607684	chr7:80286344-80289439	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv888536	chr7:80287358-80297720	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3366118	chr7:80288366-80290864	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3211886	CD36	cis	multi-tissue	Pritchard

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80269400-80305000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:80272600-80293600	Weak transcription	Placenta	Placenta
3	chr7:80279000-80306600	Weak transcription	Fetal Intestine Small	intestine
4	chr7:80279800-80303400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:80282200-80291800	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:80282800-80291000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:80283200-80292600	Genic enhancers	Adipose Nuclei	Adipose
8	chr7:80284600-80291600	Weak transcription	Spleen	Spleen
9	chr7:80284600-80309800	Weak transcription	Psoas Muscle	Psoas
10	chr7:80285200-80291200	Weak transcription	Left Ventricle	heart
11	chr7:80285800-80291600	Weak transcription	Right Ventricle	heart
12	chr7:80285800-80308200	Weak transcription	Liver	Liver
13	chr7:80287200-80290200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:80288600-80290000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:80288600-80306800	Weak transcription	Lung	lung
16	chr7:80288800-80290000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:80288800-80292000	Weak transcription	Fetal Heart	heart
18	chr7:80288800-80295200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:80288800-80301800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr7:80288800-80308200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr7:80288800-80309600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:80289000-80290000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:80289000-80294400	Weak transcription	Fetal Lung	lung
24	chr7:80289000-80305000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:80289000-80308400	Strong transcription	Monocytes-CD14+_RO01746	blood

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