Variant report

Variant	rs7789369
Chromosome Location	chr7:80226147-80226148
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10216184	0.96[CEU][hapmap];0.94[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10238304	0.83[EUR][1000 genomes]
rs10240336	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10247260	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10261849	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10261980	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10265215	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10265457	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10265780	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10268340	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10268404	0.92[CEU][hapmap]
rs10268417	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs10268662	0.85[EUR][1000 genomes]
rs10268765	0.85[EUR][1000 genomes]
rs10275699	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12532196	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs12667404	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12706916	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13222488	0.99[EUR][1000 genomes]
rs13225492	0.95[CEU][hapmap];0.87[YRI][hapmap];0.97[EUR][1000 genomes]
rs13228738	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13244883	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1464792	0.96[CEU][hapmap];0.88[YRI][hapmap];0.96[EUR][1000 genomes]
rs1524596	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1722506	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1722507	0.92[CEU][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes]
rs17263407	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1761663	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1949818	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1953300	0.97[EUR][1000 genomes]
rs1984112	0.96[EUR][1000 genomes]
rs2030710	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2030711	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2065666	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2065668	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2151916	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2691199	0.85[EUR][1000 genomes]
rs2691200	0.85[EUR][1000 genomes]
rs28369066	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28600997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28645928	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3173800	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3211816	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs3211820	0.88[CEU][hapmap]
rs3211822	0.88[CEU][hapmap]
rs3211827	0.96[CEU][hapmap];0.88[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3211834	0.88[CEU][hapmap]
rs3211871	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3211886	0.96[CEU][hapmap];0.88[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34493313	0.95[EUR][1000 genomes]
rs34801616	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62461673	0.80[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs62461690	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62461693	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62461695	0.96[ASN][1000 genomes]
rs62461724	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6965070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6968407	1.00[CEU][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6969989	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6972923	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6973242	0.85[ASW][hapmap];1.00[CEU][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.99[EUR][1000 genomes]
rs7784648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7795092	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7806711	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7807445	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs997906	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv888525	chr7:80148668-80232471	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv525704	chr7:80203718-80236014	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7789369	CD36	cis	multi-tissue	Pritchard

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80219400-80226400	Weak transcription	Fetal Lung	lung
2	chr7:80219400-80229800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:80223800-80229400	Weak transcription	Stomach Mucosa	stomach
4	chr7:80223800-80231400	Weak transcription	Right Ventricle	heart
5	chr7:80224000-80229400	Weak transcription	Psoas Muscle	Psoas
6	chr7:80224200-80226600	Weak transcription	Fetal Heart	heart
7	chr7:80224200-80229800	Weak transcription	Left Ventricle	heart
8	chr7:80225000-80226200	Weak transcription	Adipose Nuclei	Adipose
9	chr7:80225400-80226400	Enhancers	Fetal Muscle Leg	muscle
10	chr7:80225600-80227400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:80225600-80229400	Weak transcription	Right Atrium	heart
12	chr7:80226000-80226200	Enhancers	HepG2	liver
13	chr7:80226000-80227800	Enhancers	Pancreatic Islets	Pancreatic Islet

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