Variant report

Variant	rs3212163
Chromosome Location	chr7:80273433-80273434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr7:80272691-80273827	ECC-1	luminal epithelium:	n/a	n/a
2	ESR1	chr7:80273278-80273757	ECC-1	luminal epithelium:	n/a	n/a
3	ZNF217	chr7:80272853-80273438	MCF-7	breast:	n/a	n/a
4	NFIC	chr7:80272735-80273963	ECC-1	luminal epithelium:	n/a	n/a
5	NR3C1	chr7:80273278-80273732	ECC-1	luminal epithelium:	n/a	n/a
6	FOXM1	chr7:80272677-80274021	ECC-1	luminal epithelium:	n/a	n/a
7	MAX	chr7:80273255-80273782	ECC-1	luminal epithelium:	n/a	n/a
8	GATA3	chr7:80272843-80273486	MCF-7	breast:	n/a	chr7:80273297-80273313
9	NR3C1	chr7:80273338-80273645	ECC-1	luminal epithelium:	n/a	n/a
10	TEAD4	chr7:80272755-80273806	ECC-1	luminal epithelium:	n/a	chr7:80272797-80272806
11	SRF	chr7:80273330-80273665	ECC-1	luminal epithelium:	n/a	n/a
12	SIN3AK20	chr7:80272716-80273545	MCF-7	breast:	n/a	n/a
13	ESR1	chr7:80273183-80273762	ECC-1	luminal epithelium:	n/a	n/a
14	NFIC	chr7:80273170-80273816	ECC-1	luminal epithelium:	n/a	n/a
15	FOXM1	chr7:80272717-80273527	MCF-7	breast:	n/a	n/a
16	ESR1	chr7:80273228-80273800	ECC-1	luminal epithelium:	n/a	n/a
17	SRF	chr7:80273263-80273808	ECC-1	luminal epithelium:	n/a	n/a
18	TEAD4	chr7:80272813-80273959	ECC-1	luminal epithelium:	n/a	n/a
19	GATA1	chr7:80272323-80273659	PBDE	blood:	n/a	chr7:80273297-80273313 chr7:80272725-80272742
20	CEBPB	chr7:80272790-80273832	ECC-1	luminal epithelium:	n/a	n/a
21	GATA3	chr7:80272486-80273693	MCF-7	breast:	n/a	chr7:80273297-80273313 chr7:80272725-80272742
22	FOXM1	chr7:80272631-80274017	ECC-1	luminal epithelium:	n/a	n/a
23	EP300	chr7:80272705-80274027	ECC-1	luminal epithelium:	n/a	chr7:80273947-80273961
24	TCF12	chr7:80273165-80273822	ECC-1	luminal epithelium:	n/a	n/a
25	EP300	chr7:80272852-80273950	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
CD36	TF binding region

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10428893	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10429164	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10499857	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10499858	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10669209	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1133344	0.91[ASN][1000 genomes]
rs11768747	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11768817	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11771839	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11772036	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11971740	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11971793	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11972894	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11974227	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12113010	0.91[EUR][1000 genomes]
rs1334511	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1360741	0.97[ASN][1000 genomes]
rs1534314	1.00[EUR][1000 genomes]
rs17154130	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17154181	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1924	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3173798	1.00[EUR][1000 genomes]
rs3173799	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3211817	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3211828	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3211830	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3211838	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3211851	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3211867	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3211868	1.00[EUR][1000 genomes]
rs3211869	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3211875	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3212162	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35179913	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4410854	0.98[EUR][1000 genomes]
rs58408258	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60133848	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60854150	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6960369	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9641866	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9784998	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9918530	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9918586	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv888527	chr7:80248029-80279460	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv888528	chr7:80252518-80280117	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv888529	chr7:80252518-80295701	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1027411	chr7:80256255-80276756	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1032295	chr7:80256738-80276756	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv2761341	chr7:80256738-80276768	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv888530	chr7:80258564-80279460	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv888531	chr7:80258564-80280117	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv888532	chr7:80258564-80282636	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv464607	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv607683	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv888533	chr7:80272568-80289765	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80269400-80305000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:80270600-80274000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr7:80271200-80274200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:80271400-80275400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:80272000-80280400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:80272200-80273600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:80272200-80274200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr7:80272200-80274200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:80272400-80273800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:80272600-80273600	Enhancers	NHEK	skin
11	chr7:80272600-80273800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:80272600-80274200	Active TSS	Right Atrium	heart
13	chr7:80272600-80275400	Weak transcription	Liver	Liver
14	chr7:80272600-80293600	Weak transcription	Placenta	Placenta
15	chr7:80272800-80273600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:80272800-80273600	Enhancers	Right Ventricle	heart
17	chr7:80272800-80282600	Weak transcription	Fetal Heart	heart
18	chr7:80273000-80275400	Weak transcription	Fetal Intestine Small	intestine
19	chr7:80273000-80275400	Weak transcription	Left Ventricle	heart
20	chr7:80273000-80275600	Weak transcription	HepG2	liver
21	chr7:80273200-80274200	Genic enhancers	Primary monocytes fromperipheralblood	blood
22	chr7:80273200-80275200	Weak transcription	NHDF-Ad	bronchial
23	chr7:80273200-80275800	Weak transcription	Psoas Muscle	Psoas
24	chr7:80273400-80273600	Enhancers	Placenta Amnion	Placenta Amnion
25	chr7:80273400-80273600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr7:80273400-80273600	Enhancers	Small Intestine	intestine
27	chr7:80273400-80274200	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr7:80273400-80274400	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose

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