Variant report

Variant	rs9918586
Chromosome Location	chr7:80266736-80266737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr7:80266693-80268248	GM12878	blood:	n/a	chr7:80267704-80267720

Variant related genes	Relation type
CD36	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10428893	0.95[EUR][1000 genomes]
rs10429164	0.95[EUR][1000 genomes]
rs10499857	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs10499858	0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs10669209	0.98[EUR][1000 genomes]
rs11768747	0.89[EUR][1000 genomes]
rs11768817	0.89[EUR][1000 genomes]
rs11771839	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs11772036	0.89[EUR][1000 genomes]
rs1194181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11971740	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs11971793	0.98[EUR][1000 genomes]
rs11972894	0.98[EUR][1000 genomes]
rs11974227	0.89[EUR][1000 genomes]
rs12113010	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1334511	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs1360741	0.84[CEU][hapmap]
rs1534314	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1537593	0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.99[ASN][1000 genomes]
rs17154130	0.89[EUR][1000 genomes]
rs17154181	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs1924	0.84[CEU][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes]
rs3173798	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3173799	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs3211817	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs3211828	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs3211830	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs3211838	0.98[EUR][1000 genomes]
rs3211851	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs3211867	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs3211868	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3211869	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs3211875	0.98[EUR][1000 genomes]
rs3211883	0.81[CEU][hapmap]
rs3212162	0.93[EUR][1000 genomes]
rs3212163	0.98[EUR][1000 genomes]
rs35179913	0.98[EUR][1000 genomes]
rs41364549	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4410854	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58408258	0.98[EUR][1000 genomes]
rs60133848	0.98[EUR][1000 genomes]
rs60854150	0.95[EUR][1000 genomes]
rs6960369	0.98[EUR][1000 genomes]
rs9641866	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs9784998	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs9918530	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv888527	chr7:80248029-80279460	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv888528	chr7:80252518-80280117	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv888529	chr7:80252518-80295701	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1023254	chr7:80256255-80272725	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1027411	chr7:80256255-80276756	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1032295	chr7:80256738-80276756	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv2761341	chr7:80256738-80276768	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv888530	chr7:80258564-80279460	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv888531	chr7:80258564-80280117	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv888532	chr7:80258564-80282636	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv971195	chr7:80260254-80270989	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv464607	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv607683	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9918586	CD36	cis	multi-tissue	Pritchard

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80260400-80267200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr7:80260400-80273400	Weak transcription	Small Intestine	intestine
3	chr7:80260600-80267000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:80261800-80266800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:80262400-80272600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:80263400-80267400	Enhancers	NHDF-Ad	bronchial
7	chr7:80263400-80268000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:80263400-80268000	Enhancers	NHLF	lung
9	chr7:80263600-80267800	Weak transcription	Right Ventricle	heart
10	chr7:80263800-80267400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:80263800-80268000	Weak transcription	Placenta	Placenta
12	chr7:80263800-80270400	Weak transcription	HMEC	breast
13	chr7:80264200-80270000	Weak transcription	HSMM	muscle
14	chr7:80264400-80267000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:80264400-80267200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:80264600-80268400	Weak transcription	Liver	Liver
17	chr7:80264800-80268200	Enhancers	Fetal Heart	heart
18	chr7:80265000-80266800	Enhancers	Adipose Nuclei	Adipose
19	chr7:80265200-80267800	Enhancers	HSMMtube	muscle
20	chr7:80265400-80269200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:80265400-80269800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:80265400-80270400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr7:80265600-80267000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:80265600-80267000	Weak transcription	Right Atrium	heart
25	chr7:80265600-80267400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:80265600-80267600	Weak transcription	Left Ventricle	heart
27	chr7:80265600-80269400	Weak transcription	Osteobl	bone
28	chr7:80265800-80267000	Weak transcription	Primary B cells from cord blood	blood
29	chr7:80265800-80268000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:80266000-80267800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:80266000-80268200	Enhancers	GM12878-XiMat	blood
32	chr7:80266000-80271400	Active TSS	Psoas Muscle	Psoas
33	chr7:80266000-80271800	Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr7:80266200-80266800	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr7:80266200-80267600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr7:80266200-80270800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:80266200-80272000	Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr7:80266400-80267200	Enhancers	Rectal Smooth Muscle	rectum
39	chr7:80266400-80269000	Weak transcription	Fetal Lung	lung
40	chr7:80266400-80271400	Active TSS	Fetal Muscle Leg	muscle
41	chr7:80266400-80271600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links