Variant report

Variant	rs3218643
Chromosome Location	chr3:121207094-121207095
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:121197599..121199340-chr3:121205840..121207439,2	K562	blood:
2	chr3:121206534..121207799-chr3:121247617..121248857,4	MCF-7	breast:
3	chr3:121206957..121207672-chr3:121248079..121248871,2	MCF-7	breast:
4	chr3:121205722..121207237-chr3:121210537..121212477,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2306211	1.00[CEU][hapmap]
rs3218639	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3218640	1.00[CEU][hapmap]
rs3218642	1.00[CHB][hapmap]
rs3772119	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv829702	chr3:121045793-121227975	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv591400	chr3:121070299-121339354	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv999335	chr3:121100283-121408766	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv877381	chr3:121192350-121343500	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1007522	chr3:121200563-121374051	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121151200-121263800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:121176400-121214800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:121176400-121224200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:121177200-121237000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:121177800-121214800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:121178000-121208600	Weak transcription	Fetal Heart	heart
7	chr3:121178200-121263800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:121181000-121219600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:121183800-121234400	Weak transcription	Primary B cells from cord blood	blood
10	chr3:121186400-121255600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:121186600-121211600	Weak transcription	Primary T cells from cord blood	blood
12	chr3:121186800-121213000	Weak transcription	Fetal Intestine Small	intestine
13	chr3:121187000-121209600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:121187200-121223400	Weak transcription	Fetal Intestine Large	intestine
15	chr3:121192200-121233600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:121193000-121212400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:121193200-121237000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:121195200-121208200	Weak transcription	Thymus	Thymus
19	chr3:121195600-121233800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:121195800-121207400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:121196000-121208800	Weak transcription	Fetal Muscle Leg	muscle
22	chr3:121196800-121208600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:121197000-121207600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr3:121197200-121207600	Weak transcription	HepG2	liver
25	chr3:121197200-121217400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:121197200-121233400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:121198800-121210000	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr3:121199200-121216200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:121199800-121213200	Weak transcription	Fetal Stomach	stomach
30	chr3:121200400-121222000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:121200600-121264000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:121201000-121209000	Weak transcription	Hela-S3	cervix
33	chr3:121201000-121227000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr3:121201000-121250600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr3:121202000-121208200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:121202000-121208400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:121202000-121208800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:121202200-121207800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr3:121202400-121209000	Weak transcription	HUVEC	blood vessel
40	chr3:121202400-121215600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:121202400-121263200	Weak transcription	NHLF	lung
42	chr3:121202400-121263800	Weak transcription	HSMM	muscle
43	chr3:121202600-121207400	Weak transcription	Fetal Thymus	thymus
44	chr3:121202600-121207800	Weak transcription	HMEC	breast
45	chr3:121202600-121208600	Weak transcription	NHDF-Ad	bronchial
46	chr3:121202600-121209600	Weak transcription	Osteobl	bone
47	chr3:121202600-121214400	Weak transcription	NH-A	brain
48	chr3:121202600-121233400	Weak transcription	NHEK	skin
49	chr3:121202800-121236600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr3:121203600-121208600	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links