Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:127769685..127772349-chr7:127839155..127841904,2	K562	blood:
2	chr7:127771531..127774233-chr7:127890861..127893164,2	K562	blood:
3	chr7:127770457..127772622-chr7:127774413..127777391,3	MCF-7	breast:
4	chr7:127771299..127774021-chr7:127790883..127793192,2	K562	blood:
5	chr7:127770664..127774572-chr7:127774612..127778986,4	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs124756	0.86[CHB][hapmap];0.82[YRI][hapmap]
rs2241291	0.82[YRI][hapmap]
rs322731	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs322733	0.89[ASN][1000 genomes]
rs322735	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs322736	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs322737	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs322748	0.92[ASN][1000 genomes]
rs322750	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs322753	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs322754	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs322769	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs322772	0.83[EUR][1000 genomes]
rs322773	0.83[EUR][1000 genomes]
rs322776	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs322777	0.82[EUR][1000 genomes]
rs322781	0.81[AFR][1000 genomes]
rs322813	0.86[CHB][hapmap];0.82[YRI][hapmap]
rs322819	0.86[CHB][hapmap]
rs322820	0.81[CHB][hapmap]
rs322821	0.81[CHB][hapmap];0.82[YRI][hapmap]
rs322823	0.86[CHB][hapmap]
rs322825	0.86[CHB][hapmap];0.82[YRI][hapmap]
rs322826	0.82[CHB][hapmap]
rs322840	0.86[CHB][hapmap]
rs3757760	0.82[YRI][hapmap]
rs3779523	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127762400-127772000	Weak transcription	Right Atrium	heart
2	chr7:127770600-127773400	Enhancers	HUVEC	blood vessel
3	chr7:127771400-127771800	Bivalent Enhancer	Adipose Nuclei	Adipose
4	chr7:127771400-127772200	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search: