Variant report

Variant	rs322776
Chromosome Location	chr7:127759841-127759842
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs322731	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs322733	0.84[ASN][1000 genomes]
rs322735	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322736	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322737	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322748	0.87[ASN][1000 genomes]
rs322750	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322753	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322754	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322764	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs322769	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs322772	0.91[EUR][1000 genomes]
rs322773	0.91[EUR][1000 genomes]
rs322777	0.94[EUR][1000 genomes]
rs322781	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs322825	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127744600-127761600	Weak transcription	Right Atrium	heart
2	chr7:127753400-127762000	Weak transcription	Fetal Brain Female	brain
3	chr7:127756000-127761400	Weak transcription	Osteobl	bone
4	chr7:127756000-127762000	Weak transcription	HSMM	muscle
5	chr7:127756200-127761800	Weak transcription	Esophagus	oesophagus
6	chr7:127756600-127761200	Weak transcription	NHEK	skin
7	chr7:127756600-127761400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:127757200-127760600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:127757200-127761000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:127758000-127761000	Weak transcription	Spleen	Spleen
11	chr7:127758600-127761800	Weak transcription	Primary B cells from cord blood	blood
12	chr7:127759600-127761000	Weak transcription	Fetal Thymus	thymus
13	chr7:127759600-127761000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr7:127759600-127761200	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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