Variant report

Variant	rs32405
Chromosome Location	chr5:167378752-167378753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1862417	0.92[JPT][hapmap]
rs864788	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167373600-167379600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:167375000-167380400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:167375800-167379400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:167376000-167381200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:167376600-167380600	Enhancers	Fetal Heart	heart
6	chr5:167377000-167379000	Enhancers	Fetal Brain Male	brain
7	chr5:167377000-167379600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:167377200-167379200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:167377200-167380800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:167377400-167379200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:167377400-167380600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:167377600-167378800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:167377600-167379000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:167377600-167379600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:167377800-167378800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:167378000-167378800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:167378000-167378800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:167378000-167378800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:167378000-167378800	Enhancers	Fetal Kidney	kidney
20	chr5:167378000-167378800	Flanking Active TSS	HMEC	breast
21	chr5:167378000-167380600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:167378200-167378800	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr5:167378200-167378800	Active TSS	Stomach Smooth Muscle	stomach
24	chr5:167378200-167378800	Flanking Active TSS	HSMM	muscle
25	chr5:167378200-167378800	Active TSS	HSMMtube	muscle
26	chr5:167378200-167379600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr5:167378400-167378800	Active TSS	Ovary	ovary
28	chr5:167378400-167378800	Bivalent/Poised TSS	A549	lung
29	chr5:167378400-167379200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:167378400-167379400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:167378400-167379400	Weak transcription	Right Ventricle	heart
32	chr5:167378400-167379600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr5:167378400-167379600	Weak transcription	Left Ventricle	heart
34	chr5:167378400-167380200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr5:167378400-167380400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr5:167378400-167380400	Weak transcription	NH-A	brain
37	chr5:167378600-167378800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr5:167378600-167378800	Active TSS	Muscle Satellite Cultured Cells	--
39	chr5:167378600-167378800	Enhancers	Esophagus	oesophagus
40	chr5:167378600-167378800	Flanking Active TSS	Osteobl	bone
41	chr5:167378600-167379000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr5:167378600-167379000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr5:167378600-167379400	Weak transcription	Right Atrium	heart
44	chr5:167378600-167379400	Weak transcription	NHEK	skin
45	chr5:167378600-167381600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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