Variant report

Variant	rs864788
Chromosome Location	chr5:167377835-167377836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs32405	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167367600-167378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:167369200-167378200	Enhancers	HSMM	muscle
3	chr5:167370000-167378200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:167372800-167378200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:167373200-167378000	Enhancers	HMEC	breast
6	chr5:167373400-167378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:167373400-167378000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:167373400-167378000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:167373400-167378200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:167373400-167378600	Weak transcription	Esophagus	oesophagus
11	chr5:167373600-167379600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:167374800-167378200	Weak transcription	Ovary	ovary
13	chr5:167375000-167380400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:167375800-167379400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:167376000-167378000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:167376000-167378400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:167376000-167378600	Enhancers	NHEK	skin
18	chr5:167376000-167381200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:167376200-167378400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:167376600-167378000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr5:167376600-167378400	Enhancers	NH-A	brain
22	chr5:167376600-167380600	Enhancers	Fetal Heart	heart
23	chr5:167376800-167378000	Enhancers	Osteobl	bone
24	chr5:167376800-167378400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:167376800-167378400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr5:167377000-167378600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:167377000-167379000	Enhancers	Fetal Brain Male	brain
28	chr5:167377000-167379600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:167377200-167378000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:167377200-167378000	Enhancers	Brain Germinal Matrix	brain
31	chr5:167377200-167378400	Enhancers	Fetal Stomach	stomach
32	chr5:167377200-167379200	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr5:167377200-167380800	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr5:167377400-167378000	Weak transcription	Fetal Kidney	kidney
35	chr5:167377400-167378200	Weak transcription	HSMMtube	muscle
36	chr5:167377400-167378400	Enhancers	Fetal Muscle Leg	muscle
37	chr5:167377400-167379200	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr5:167377400-167380600	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr5:167377600-167378000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:167377600-167378000	Weak transcription	Right Atrium	heart
41	chr5:167377600-167378200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr5:167377600-167378400	Enhancers	Fetal Lung	lung
43	chr5:167377600-167378400	Enhancers	Rectal Smooth Muscle	rectum
44	chr5:167377600-167378800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:167377600-167379000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:167377600-167379600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr5:167377800-167378200	Enhancers	Colon Smooth Muscle	Colon
48	chr5:167377800-167378200	Weak transcription	Left Ventricle	heart
49	chr5:167377800-167378200	Weak transcription	Right Ventricle	heart
50	chr5:167377800-167378200	Enhancers	Stomach Smooth Muscle	stomach

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