Variant report

Variant	rs324544
Chromosome Location	chr9:9108336-9108337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2777489	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs324480	0.81[GIH][hapmap]
rs324543	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs324546	0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes]
rs472324	0.82[LWK][hapmap];0.89[YRI][hapmap]
rs557369	0.80[CHB][hapmap]
rs560380	0.88[ASW][hapmap];0.89[CHD][hapmap];0.83[LWK][hapmap]
rs634921	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs674362	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv892248	chr9:9024254-9176176	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv892250	chr9:9032693-9125205	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1033404	chr9:9058285-9211223	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv831505	chr9:9072216-9277320	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv892251	chr9:9074830-9119229	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9104800-9108600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr9:9105800-9108400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:9105800-9108600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:9106000-9108800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:9108200-9108600	Enhancers	Fetal Heart	heart
6	chr9:9108200-9108600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:9108200-9109000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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