Variant report
| Variant | rs325678 |
|---|---|
| Chromosome Location | chr11:6168697-6168698 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1350995 | 0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1381912 | 0.90[AMR][1000 genomes] |
| rs1381913 | 0.90[AMR][1000 genomes] |
| rs1599693 | 0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2014211 | 0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2219723 | 0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2344346 | 0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs325632 | 0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs325633 | 0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs325635 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs325638 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs325659 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs325660 | 0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs325663 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs325664 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs325686 | 0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4758387 | 0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4758390 | 0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7950024 | 0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7950500 | 0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs992346 | 0.90[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553241 | chr11:5506034-6203685 | Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
| 2 | nsv530216 | chr11:5614439-6468232 | Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| 3 | nsv1036389 | chr11:5695451-6177680 | Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 55 gene(s) | inside rSNPs | diseases |
| 4 | nsv540943 | chr11:5695451-6177680 | Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 55 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:6165000-6170600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
