Variant report

Variant	rs325686
Chromosome Location	chr11:6178901-6178902
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1350995	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1381912	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1381913	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1599693	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2014211	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2219723	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2344346	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs325632	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs325633	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs325635	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs325638	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs325659	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs325660	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs325663	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs325664	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs325678	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs325681	0.86[AFR][1000 genomes]
rs325695	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs325698	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34559340	0.81[ASN][1000 genomes]
rs34953443	0.81[ASN][1000 genomes]
rs35945236	0.81[ASN][1000 genomes]
rs4758387	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4758390	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6578739	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7950024	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7950500	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs992346	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv896970	chr11:6173000-6217152	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv523933	chr11:6173346-6204316	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6177800-6179000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr11:6177800-6179200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:6178000-6179000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:6178000-6179200	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links