Variant report

Variant	rs32613
Chromosome Location	chr5:57750267-57750268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57157132..57161136-chr5:57747678..57750826,3	MCF-7	breast:
2	chr1:149221384..149225232-chr5:57748679..57751129,3	MCF-7	breast:
3	chr5:57490051..57491954-chr5:57748730..57750590,2	MCF-7	breast:
4	chr5:57538142..57540625-chr5:57748575..57750284,2	MCF-7	breast:
5	chr5:57739641..57742111-chr5:57749437..57750937,2	MCF-7	breast:
6	chr5:57077792..57079742-chr5:57748468..57750917,2	MCF-7	breast:
7	chr5:57401526..57403510-chr5:57748053..57750408,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10514852	1.00[AFR][1000 genomes]
rs13181639	1.00[AFR][1000 genomes]
rs150271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs154492	0.94[ASN][1000 genomes]
rs39967	1.00[ASN][1000 genomes]
rs41088	1.00[ASN][1000 genomes]
rs42740	1.00[ASN][1000 genomes]
rs697134	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs702709	0.97[ASN][1000 genomes]
rs702710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs702717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs702720	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs702721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702723	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs832631	0.97[ASN][1000 genomes]
rs832636	0.97[ASN][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57742800-57750800	Weak transcription	Aorta	Aorta
3	chr5:57742800-57751400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:57743800-57751000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:57746000-57751000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr5:57746800-57750400	Weak transcription	Fetal Thymus	thymus
7	chr5:57746800-57750800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:57747000-57750400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:57747000-57752800	Weak transcription	Fetal Intestine Small	intestine
10	chr5:57747400-57752400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:57747800-57753000	Strong transcription	Liver	Liver
12	chr5:57747800-57754200	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:57748000-57752400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:57748200-57751000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:57748400-57751000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:57748400-57753400	Strong transcription	Fetal Intestine Large	intestine
17	chr5:57748600-57750400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:57748600-57750800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:57748600-57750800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr5:57748600-57751000	Weak transcription	Brain Angular Gyrus	brain
21	chr5:57748600-57755000	Transcr. at gene 5' and 3'	A549	lung
22	chr5:57748800-57750400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:57748800-57750600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:57748800-57754200	Weak transcription	Primary B cells from cord blood	blood
25	chr5:57748800-57754600	Weak transcription	Spleen	Spleen
26	chr5:57749000-57750600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:57749000-57750600	Weak transcription	HepG2	liver
28	chr5:57749000-57751400	Genic enhancers	Hela-S3	cervix
29	chr5:57749000-57754400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr5:57749200-57751400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:57749200-57751800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
32	chr5:57749200-57752000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr5:57749200-57752400	Strong transcription	Placenta	Placenta
34	chr5:57749200-57752400	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr5:57749200-57753000	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr5:57749200-57753400	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
37	chr5:57749200-57754600	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
38	chr5:57749200-57754800	Transcr. at gene 5' and 3'	HUVEC	blood vessel
39	chr5:57749200-57755000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr5:57749200-57755000	Transcr. at gene 5' and 3'	NH-A	brain
41	chr5:57749400-57751000	Strong transcription	NHDF-Ad	bronchial
42	chr5:57749400-57753200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr5:57749400-57753600	Genic enhancers	Fetal Heart	heart
44	chr5:57749600-57750400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:57749600-57750600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr5:57749600-57751000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr5:57749600-57753000	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr5:57749600-57753800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr5:57749600-57754800	Transcr. at gene 5' and 3'	HSMMtube	muscle
50	chr5:57749600-57755000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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