Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80546955..80550718-chr7:80817331..80823169,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10261434	1.00[MEX][hapmap]
rs10264197	1.00[MEX][hapmap]
rs1397013	0.92[LWK][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs1533070	1.00[MEX][hapmap]
rs327682	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327685	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327687	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327690	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327692	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs327695	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327699	1.00[CHB][hapmap]
rs327709	0.89[YRI][hapmap];0.92[EUR][1000 genomes]
rs471783	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492377	1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500454	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512906	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517609	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551994	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978281	1.00[MEX][hapmap]
rs7455610	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7789729	1.00[MEX][hapmap]
rs996720	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888557	chr7:80813081-80917148	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023149	chr7:80817550-80928090	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80803800-80819800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80805000-80819800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:80816200-80818000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:80816200-80820000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:80816800-80820000	Weak transcription	Psoas Muscle	Psoas
6	chr7:80817000-80820000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:80817200-80820000	Weak transcription	Osteobl	bone
8	chr7:80817200-80820200	Weak transcription	Adipose Nuclei	Adipose
9	chr7:80817400-80819800	Weak transcription	NHLF	lung
10	chr7:80817400-80820000	Weak transcription	NHDF-Ad	bronchial
11	chr7:80817600-80819800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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