Variant report

Variant	rs1533070
Chromosome Location	chr7:80843940-80843941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80548614..80550203-chr7:80841572..80844375,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10261434	1.00[MEX][hapmap]
rs10264197	1.00[MEX][hapmap]
rs1397013	1.00[MEX][hapmap]
rs16887043	1.00[EUR][1000 genomes]
rs28550223	1.00[EUR][1000 genomes]
rs327696	1.00[MEX][hapmap]
rs327743	1.00[EUR][1000 genomes]
rs327746	1.00[EUR][1000 genomes]
rs56892113	1.00[EUR][1000 genomes]
rs57286900	1.00[EUR][1000 genomes]
rs59159299	1.00[EUR][1000 genomes]
rs59321991	1.00[EUR][1000 genomes]
rs59514699	1.00[EUR][1000 genomes]
rs59668780	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6978281	1.00[MEX][hapmap]
rs73378455	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73378498	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73380403	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73380406	0.96[AFR][1000 genomes]
rs73380408	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73380410	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7789729	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888557	chr7:80813081-80917148	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023149	chr7:80817550-80928090	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029034	chr7:80838012-81137146	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv831045	chr7:80841693-81012404	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links