Variant report

Variant	rs28550223
Chromosome Location	chr7:80984040-80984041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10257896	1.00[EUR][1000 genomes]
rs12113787	1.00[EUR][1000 genomes]
rs13437712	1.00[EUR][1000 genomes]
rs1533070	1.00[EUR][1000 genomes]
rs16887043	1.00[EUR][1000 genomes]
rs28849482	1.00[EUR][1000 genomes]
rs28860808	1.00[EUR][1000 genomes]
rs28888529	1.00[EUR][1000 genomes]
rs327743	1.00[EUR][1000 genomes]
rs327746	1.00[EUR][1000 genomes]
rs56892113	1.00[EUR][1000 genomes]
rs57201575	1.00[EUR][1000 genomes]
rs57286900	1.00[EUR][1000 genomes]
rs58229927	1.00[EUR][1000 genomes]
rs59159299	1.00[EUR][1000 genomes]
rs59321991	1.00[EUR][1000 genomes]
rs59514699	1.00[EUR][1000 genomes]
rs59668780	1.00[EUR][1000 genomes]
rs61158415	1.00[EUR][1000 genomes]
rs61496920	1.00[EUR][1000 genomes]
rs73378455	1.00[EUR][1000 genomes]
rs73378498	1.00[EUR][1000 genomes]
rs73380403	1.00[EUR][1000 genomes]
rs73380408	1.00[EUR][1000 genomes]
rs73380410	1.00[EUR][1000 genomes]
rs9656505	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1029034	chr7:80838012-81137146	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831045	chr7:80841693-81012404	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80984000-80984400	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links