Variant report

Variant	rs73380410
Chromosome Location	chr7:80863152-80863153
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80858692..80860259-chr7:80861718..80863525,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12113787	1.00[EUR][1000 genomes]
rs13437712	1.00[EUR][1000 genomes]
rs1533070	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16887043	1.00[EUR][1000 genomes]
rs28550223	1.00[EUR][1000 genomes]
rs28849482	1.00[EUR][1000 genomes]
rs28860808	1.00[EUR][1000 genomes]
rs28888529	1.00[EUR][1000 genomes]
rs327743	1.00[EUR][1000 genomes]
rs327746	1.00[EUR][1000 genomes]
rs56892113	1.00[EUR][1000 genomes]
rs57201575	1.00[EUR][1000 genomes]
rs57286900	1.00[EUR][1000 genomes]
rs58229927	1.00[EUR][1000 genomes]
rs59159299	1.00[EUR][1000 genomes]
rs59321991	1.00[EUR][1000 genomes]
rs59514699	1.00[EUR][1000 genomes]
rs59668780	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61496920	1.00[EUR][1000 genomes]
rs73378455	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73378498	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73380403	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73380406	1.00[AFR][1000 genomes]
rs73380408	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888557	chr7:80813081-80917148	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023149	chr7:80817550-80928090	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029034	chr7:80838012-81137146	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv831045	chr7:80841693-81012404	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv888558	chr7:80844667-80917148	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv607686	chr7:80857196-80917148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80859000-80864600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:80859600-80863400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:80859600-80864400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:80859600-80864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:80861400-80863200	Enhancers	Fetal Muscle Trunk	muscle
6	chr7:80861400-80865200	Weak transcription	Fetal Lung	lung
7	chr7:80861600-80863200	Enhancers	Esophagus	oesophagus
8	chr7:80861800-80864200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:80861800-80866400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:80862800-80863400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:80863000-80863200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:80863000-80863200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:80863000-80863200	Enhancers	Pancreas	Pancrea
14	chr7:80863000-80863400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links