Variant report
| Variant | rs56892113 |
|---|---|
| Chromosome Location | chr7:81002193-81002194 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10257896 | 1.00[EUR][1000 genomes] |
| rs12113787 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13437712 | 1.00[EUR][1000 genomes] |
| rs1533070 | 1.00[EUR][1000 genomes] |
| rs16887043 | 1.00[EUR][1000 genomes] |
| rs28550223 | 1.00[EUR][1000 genomes] |
| rs28849482 | 1.00[EUR][1000 genomes] |
| rs28860808 | 1.00[EUR][1000 genomes] |
| rs28888529 | 1.00[EUR][1000 genomes] |
| rs327743 | 1.00[EUR][1000 genomes] |
| rs327746 | 1.00[EUR][1000 genomes] |
| rs57201575 | 1.00[EUR][1000 genomes] |
| rs57286900 | 1.00[EUR][1000 genomes] |
| rs58229927 | 1.00[EUR][1000 genomes] |
| rs59159299 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59321991 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59514699 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59668780 | 1.00[EUR][1000 genomes] |
| rs61158415 | 1.00[EUR][1000 genomes] |
| rs61496920 | 1.00[EUR][1000 genomes] |
| rs73378455 | 1.00[EUR][1000 genomes] |
| rs73378498 | 1.00[EUR][1000 genomes] |
| rs73380403 | 1.00[EUR][1000 genomes] |
| rs73380408 | 1.00[EUR][1000 genomes] |
| rs73380410 | 1.00[EUR][1000 genomes] |
| rs9656505 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029034 | chr7:80838012-81137146 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv831045 | chr7:80841693-81012404 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv888560 | chr7:80994529-81043804 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:80996600-81002800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr7:81001600-81002400 | Enhancers | NHDF-Ad | bronchial |
