Variant report

Variant	rs10257896
Chromosome Location	chr7:81065576-81065577
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10229424	1.00[AMR][1000 genomes]
rs10232061	1.00[AMR][1000 genomes]
rs10239824	1.00[AMR][1000 genomes]
rs12113787	1.00[EUR][1000 genomes]
rs13437712	1.00[EUR][1000 genomes]
rs28550223	1.00[EUR][1000 genomes]
rs28849482	1.00[EUR][1000 genomes]
rs28860808	1.00[EUR][1000 genomes]
rs28888529	1.00[EUR][1000 genomes]
rs56892113	1.00[EUR][1000 genomes]
rs57201575	1.00[EUR][1000 genomes]
rs57286900	1.00[EUR][1000 genomes]
rs58229927	1.00[EUR][1000 genomes]
rs59159299	1.00[EUR][1000 genomes]
rs59321991	1.00[EUR][1000 genomes]
rs59514699	1.00[EUR][1000 genomes]
rs61158415	1.00[EUR][1000 genomes]
rs61496920	1.00[EUR][1000 genomes]
rs9656505	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029034	chr7:80838012-81137146	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:81060000-81066800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:81062200-81066400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:81063600-81085400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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