Variant report

Variant	rs327989
Chromosome Location	chr9:108058371-108058372
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108006089..108008759-chr9:108057985..108062385,6	MCF-7	breast:
2	chr9:108057913..108059499-chr9:108062529..108064891,2	MCF-7	breast:
3	chr9:108056287..108057910-chr9:108057918..108060484,2	MCF-7	breast:
4	chr9:108052475..108054719-chr9:108057760..108060481,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10991609	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12378850	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs328009	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs328016	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs384825	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs388909	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs391232	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs391386	1.00[EUR][1000 genomes]
rs451915	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893685	chr9:107940737-108083485	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893686	chr9:107968330-108083485	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893687	chr9:107973277-108083485	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv893688	chr9:107974761-108083485	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv893689	chr9:107978563-108130606	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv893690	chr9:107992706-108083485	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108043600-108059400	Weak transcription	NHLF	lung
2	chr9:108043600-108059800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:108049400-108074200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:108050200-108061400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:108050200-108061800	Weak transcription	Fetal Stomach	stomach
6	chr9:108051000-108061600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:108052400-108061400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:108052800-108061400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:108053000-108063000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:108053200-108058400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:108053400-108061400	Weak transcription	Aorta	Aorta
12	chr9:108053600-108058600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:108053600-108060000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:108053600-108061600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:108053800-108059800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:108053800-108061400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:108054000-108058400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:108054000-108058800	Weak transcription	Fetal Intestine Small	intestine
19	chr9:108054000-108059000	Weak transcription	Adipose Nuclei	Adipose
20	chr9:108054000-108059800	Weak transcription	Lung	lung
21	chr9:108054000-108065400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:108054000-108070000	Weak transcription	Gastric	stomach
23	chr9:108054200-108058400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:108054200-108058400	Weak transcription	NHEK	skin
25	chr9:108054200-108059600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:108054200-108061800	Weak transcription	Pancreas	Pancrea
27	chr9:108054400-108058400	Weak transcription	HMEC	breast
28	chr9:108054400-108059000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr9:108054400-108059400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr9:108054400-108060000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr9:108054400-108060400	Enhancers	HepG2	liver
32	chr9:108054400-108061400	Weak transcription	Right Ventricle	heart
33	chr9:108054600-108058400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:108054600-108058800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:108054600-108059000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr9:108054600-108059200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr9:108054600-108061800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr9:108054600-108090800	Weak transcription	Psoas Muscle	Psoas
39	chr9:108054800-108058600	Weak transcription	Liver	Liver
40	chr9:108054800-108059200	Weak transcription	Fetal Lung	lung
41	chr9:108054800-108061800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:108055000-108061600	Weak transcription	Colon Smooth Muscle	Colon
43	chr9:108055000-108061600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr9:108055200-108059200	Weak transcription	Ovary	ovary
45	chr9:108055200-108061400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr9:108055200-108065000	Weak transcription	Primary B cells from cord blood	blood
47	chr9:108055400-108061000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr9:108055600-108151200	Weak transcription	Esophagus	oesophagus
49	chr9:108055800-108060600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:108056000-108058600	Weak transcription	Fetal Heart	heart

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