Variant report

Variant	rs391386
Chromosome Location	chr9:108016254-108016255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108011346..108013959-chr9:108015569..108017411,2	MCF-7	breast:
2	chr9:108005955..108009044-chr9:108014921..108018676,7	MCF-7	breast:
3	chr9:108006564..108010979-chr9:108011940..108017474,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10991609	1.00[EUR][1000 genomes]
rs12378850	1.00[EUR][1000 genomes]
rs327989	1.00[EUR][1000 genomes]
rs384825	1.00[EUR][1000 genomes]
rs388909	1.00[EUR][1000 genomes]
rs391232	0.93[EUR][1000 genomes]
rs451915	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893685	chr9:107940737-108083485	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893686	chr9:107968330-108083485	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv893687	chr9:107973277-108083485	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv893688	chr9:107974761-108083485	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv893689	chr9:107978563-108130606	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv893690	chr9:107992706-108083485	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv893691	chr9:107994629-108020284	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108008200-108033600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:108008400-108019400	Weak transcription	Left Ventricle	heart
3	chr9:108008400-108020000	Weak transcription	Primary T cells from cord blood	blood
4	chr9:108008600-108020000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:108008800-108022400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:108009000-108037200	Weak transcription	Aorta	Aorta
7	chr9:108009200-108017800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr9:108009200-108019400	Weak transcription	Ovary	ovary
9	chr9:108009400-108016600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:108009400-108017600	Weak transcription	NHDF-Ad	bronchial
11	chr9:108009400-108022200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:108010000-108016400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:108010200-108016600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr9:108010200-108019800	Weak transcription	Right Atrium	heart
15	chr9:108010400-108026200	Weak transcription	Hela-S3	cervix
16	chr9:108010800-108019600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:108011400-108022400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:108011600-108017000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:108011600-108019400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:108011600-108020000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:108011600-108021800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:108011600-108031800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:108012200-108020200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr9:108013000-108024200	Weak transcription	Esophagus	oesophagus
25	chr9:108013600-108016400	Weak transcription	Brain Germinal Matrix	brain
26	chr9:108014000-108018200	Enhancers	Brain Substantia Nigra	brain
27	chr9:108014200-108016400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:108014200-108016400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr9:108014200-108016400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr9:108014200-108016600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr9:108014200-108016600	Weak transcription	A549	lung
32	chr9:108014200-108019000	Enhancers	Brain Hippocampus Middle	brain
33	chr9:108014600-108022200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr9:108014800-108016400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:108014800-108016400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr9:108014800-108016400	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr9:108015000-108016400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr9:108015000-108016400	Weak transcription	Small Intestine	intestine
39	chr9:108015000-108016600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr9:108015000-108016600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:108015000-108016600	Weak transcription	Dnd41	blood
42	chr9:108015000-108017000	Weak transcription	Liver	Liver
43	chr9:108015000-108017200	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr9:108015000-108017200	Enhancers	HepG2	liver
45	chr9:108015000-108017400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr9:108015000-108019600	Weak transcription	Fetal Lung	lung
47	chr9:108015400-108016600	Weak transcription	Fetal Intestine Large	intestine
48	chr9:108015400-108018000	Enhancers	Brain Anterior Caudate	brain
49	chr9:108015600-108016800	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr9:108015600-108018800	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links