Variant report

Variant	rs33063
Chromosome Location	chr16:69640217-69640218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69632518..69635065-chr16:69638101..69640476,2	MCF-7	breast:
2	chr16:69634517..69637487-chr16:69638092..69640622,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1043470	1.00[ASW][hapmap];0.93[CEU][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11644997	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1465451	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1549287	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs168637	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17298067	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17299478	1.00[ASW][hapmap];0.81[CEU][hapmap];0.85[CHD][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];1.00[AFR][1000 genomes]
rs190282	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1972658	0.82[ASN][1000 genomes]
rs244416	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs244419	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs244422	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs244423	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33060	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs33061	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs33062	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs39999	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56125990	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62049971	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62049973	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62049974	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62052820	0.92[ASN][1000 genomes]
rs7193778	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs72783110	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72783112	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8048032	0.80[EUR][1000 genomes]
rs8062941	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs33063	ACD	cis	parietal	SCAN
rs33063	LOC283970	cis	multi-tissue	Pritchard
rs33063	LCAT	cis	cerebellum	SCAN
rs33063	CLEC18A	cis	Whole Blood	GTEx
rs33063	NFAT5	cis	cerebellum	SCAN

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69602200-69643200	Weak transcription	Fetal Muscle Leg	muscle
2	chr16:69602200-69646600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr16:69602200-69653600	Weak transcription	Fetal Thymus	thymus
4	chr16:69603000-69647400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:69610800-69642000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr16:69611200-69645600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr16:69612400-69643800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr16:69614000-69643200	Weak transcription	Colon Smooth Muscle	Colon
12	chr16:69614000-69644400	Weak transcription	Adipose Nuclei	Adipose
13	chr16:69617600-69653400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:69617800-69646600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr16:69619800-69644800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr16:69622200-69645400	Weak transcription	Spleen	Spleen
17	chr16:69622400-69642000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr16:69622600-69644400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr16:69623800-69646800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr16:69624000-69646800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr16:69624200-69669600	Weak transcription	Ovary	ovary
22	chr16:69624800-69642200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr16:69627000-69645400	Weak transcription	Placenta	Placenta
24	chr16:69627600-69642800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr16:69627600-69648000	Weak transcription	Lung	lung
26	chr16:69628400-69643200	Weak transcription	HSMM	muscle
27	chr16:69629000-69641000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr16:69629200-69660000	Weak transcription	Primary B cells from cord blood	blood
29	chr16:69629400-69646600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr16:69629400-69648000	Weak transcription	Esophagus	oesophagus
31	chr16:69629400-69648000	Weak transcription	Right Atrium	heart
32	chr16:69629600-69647200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr16:69629800-69643200	Weak transcription	Fetal Lung	lung
34	chr16:69629800-69644600	Weak transcription	HSMMtube	muscle
35	chr16:69629800-69645400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr16:69630000-69640600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr16:69630000-69644000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr16:69630000-69646800	Weak transcription	Primary T cells from cord blood	blood
39	chr16:69630000-69652000	Weak transcription	HUVEC	blood vessel
40	chr16:69630200-69644400	Weak transcription	HMEC	breast
41	chr16:69630200-69646600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr16:69630200-69646800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr16:69630400-69644000	Weak transcription	Osteobl	bone
44	chr16:69631000-69643800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr16:69631000-69644800	Weak transcription	Psoas Muscle	Psoas
46	chr16:69631200-69646400	Weak transcription	Fetal Intestine Large	intestine
47	chr16:69631200-69647000	Weak transcription	Liver	Liver
48	chr16:69631400-69640600	Weak transcription	Fetal Intestine Small	intestine
49	chr16:69632600-69643800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr16:69632800-69643200	Weak transcription	Fetal Brain Male	brain

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