Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69578119..69580388-chr16:69598295..69601086,2	MCF-7	breast:
2	chr16:69574674..69576920-chr16:69578465..69580569,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102908	Chromatin interaction
ENSG00000223109	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11644997	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465451	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549287	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs168637	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17298067	0.83[ASN][1000 genomes]
rs190282	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1972658	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs244416	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs244419	0.81[AMR][1000 genomes]
rs244422	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs244423	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33060	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs33061	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs33062	0.84[AMR][1000 genomes]
rs33063	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39999	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4783720	0.88[EUR][1000 genomes]
rs62049971	0.85[AMR][1000 genomes]
rs62052820	0.96[ASN][1000 genomes]
rs7193778	0.90[EUR][1000 genomes]
rs72783112	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8048032	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431514	chr16:69428599-69581699	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1852	chr16:69566121-69610962	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69569800-69579800	Weak transcription	Placenta	Placenta
2	chr16:69574600-69597800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:69577600-69579800	Weak transcription	A549	lung

Quick Search: