Variant report

Variant	rs330644
Chromosome Location	chr2:150901840-150901841
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16827753	0.91[EUR][1000 genomes]
rs193046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs330645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs330647	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs330653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60312719	0.87[EUR][1000 genomes]
rs61074717	0.87[EUR][1000 genomes]
rs73000474	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005441	chr2:150457624-151060247	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:150897600-150902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:150898800-150902600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:150898800-150902600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:150898800-150902600	Weak transcription	NHDF-Ad	bronchial
5	chr2:150898800-150902800	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:150899000-150902800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:150899200-150902400	Weak transcription	Osteobl	bone
8	chr2:150899400-150902600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:150899400-150902600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:150899400-150902600	Weak transcription	Brain Germinal Matrix	brain
11	chr2:150899400-150902600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr2:150899400-150902600	Weak transcription	NH-A	brain
13	chr2:150899400-150902800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:150899800-150902400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:150899800-150902600	Weak transcription	Fetal Lung	lung
16	chr2:150900400-150902400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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