Variant report

Variant	rs61074717
Chromosome Location	chr2:150920623-150920624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:150914715..150917504-chr2:150918623..150921614,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16827753	0.95[EUR][1000 genomes]
rs193046	0.87[EUR][1000 genomes]
rs330644	0.87[EUR][1000 genomes]
rs330645	0.87[EUR][1000 genomes]
rs330647	0.87[EUR][1000 genomes]
rs330653	0.87[EUR][1000 genomes]
rs60312719	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73000474	0.95[EUR][1000 genomes]
rs73002443	0.81[AFR][1000 genomes]
rs73966735	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005441	chr2:150457624-151060247	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv875285	chr2:150904671-150985765	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:150915800-150922600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:150916000-150921200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:150918600-150920800	Enhancers	Adipose Nuclei	Adipose
4	chr2:150918600-150921000	Enhancers	Fetal Muscle Leg	muscle
5	chr2:150918800-150920800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:150918800-150921000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:150918800-150921000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:150918800-150921200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:150918800-150921200	Enhancers	NHDF-Ad	bronchial
10	chr2:150918800-150922200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:150919000-150921000	Enhancers	HMEC	breast
12	chr2:150919000-150921000	Enhancers	HSMM	muscle
13	chr2:150919000-150921000	Enhancers	NHEK	skin
14	chr2:150919000-150921200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:150919000-150921400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr2:150919200-150920800	Enhancers	Osteobl	bone
17	chr2:150919200-150921400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:150919400-150921400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr2:150919400-150921400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:150919600-150920800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:150919600-150920800	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr2:150919600-150920800	Enhancers	HSMMtube	muscle
23	chr2:150919600-150920800	Enhancers	NHLF	lung
24	chr2:150919600-150921200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:150919600-150921800	Enhancers	Brain Germinal Matrix	brain
26	chr2:150919600-150922200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr2:150919800-150921200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr2:150919800-150921400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr2:150919800-150921400	Enhancers	Rectal Smooth Muscle	rectum
30	chr2:150919800-150921800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr2:150919800-150922200	Enhancers	Fetal Brain Female	brain
32	chr2:150920000-150920800	Enhancers	Fetal Stomach	stomach
33	chr2:150920000-150921000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:150920000-150921200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr2:150920200-150920800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr2:150920200-150920800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr2:150920200-150921000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:150920200-150921000	Enhancers	Brain Angular Gyrus	brain
39	chr2:150920200-150921200	Enhancers	H1 Cell Line	embryonic stem cell
40	chr2:150920200-150921200	Enhancers	Stomach Smooth Muscle	stomach
41	chr2:150920200-150921400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr2:150920200-150922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr2:150920200-150922000	Enhancers	Fetal Brain Male	brain
44	chr2:150920400-150920800	Enhancers	Psoas Muscle	Psoas
45	chr2:150920400-150921200	Enhancers	Brain Substantia Nigra	brain
46	chr2:150920600-150920800	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr2:150920600-150920800	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr2:150920600-150920800	Enhancers	Fetal Muscle Trunk	muscle
49	chr2:150920600-150921000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr2:150920600-150921000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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