Variant report

Variant	rs331162
Chromosome Location	chr3:78907576-78907577
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:78905349..78908050-chr3:79066223..79069346,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169855	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs162262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs162266	0.81[EUR][1000 genomes]
rs162267	0.80[EUR][1000 genomes]
rs162425	0.87[EUR][1000 genomes]
rs162426	0.87[EUR][1000 genomes]
rs162427	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs162428	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs162429	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs329805	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs329811	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs329812	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs329813	0.83[AMR][1000 genomes]
rs329815	0.80[EUR][1000 genomes]
rs329817	0.80[EUR][1000 genomes]
rs329818	0.81[ASN][1000 genomes]
rs329819	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs329822	0.81[EUR][1000 genomes]
rs329824	0.87[EUR][1000 genomes]
rs331139	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs331143	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs331145	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs331149	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs331158	0.82[AMR][1000 genomes]
rs331161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs331163	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs331164	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs331181	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs331182	0.88[EUR][1000 genomes]
rs331184	0.80[EUR][1000 genomes]
rs331188	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs331189	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs331190	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs432141	0.87[EUR][1000 genomes]
rs531125	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78896600-78908400	Weak transcription	Osteobl	bone
2	chr3:78904600-78908000	Weak transcription	Fetal Kidney	kidney
3	chr3:78905600-78908200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:78905800-78916200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:78906600-78907800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:78906800-78907600	Enhancers	Aorta	Aorta
7	chr3:78906800-78908400	Enhancers	A549	lung
8	chr3:78906800-78908400	Enhancers	HepG2	liver
9	chr3:78907000-78907600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:78907000-78908400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:78907200-78907600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:78907200-78907600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:78907200-78907600	Enhancers	Right Atrium	heart
14	chr3:78907200-78907600	Enhancers	NHDF-Ad	bronchial
15	chr3:78907200-78908200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:78907400-78916800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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