Variant report

Variant	rs331164
Chromosome Location	chr3:78911097-78911098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs162262	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs162263	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs162266	0.85[EUR][1000 genomes]
rs162267	0.85[EUR][1000 genomes]
rs162425	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs162426	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs162427	0.87[EUR][1000 genomes]
rs162428	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs162429	0.89[EUR][1000 genomes]
rs186648	0.84[EUR][1000 genomes]
rs186688	0.80[EUR][1000 genomes]
rs328045	0.84[EUR][1000 genomes]
rs329805	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs329811	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs329812	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs329815	0.85[EUR][1000 genomes]
rs329816	0.82[EUR][1000 genomes]
rs329817	0.85[EUR][1000 genomes]
rs329818	0.83[EUR][1000 genomes]
rs329819	0.85[EUR][1000 genomes]
rs329820	0.81[EUR][1000 genomes]
rs329821	0.82[EUR][1000 genomes]
rs329822	0.83[EUR][1000 genomes]
rs329824	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs329825	0.80[EUR][1000 genomes]
rs331139	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs331143	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs331145	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs331149	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs331161	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs331162	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs331163	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs331181	0.85[EUR][1000 genomes]
rs331182	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs331184	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs331188	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs331189	0.84[EUR][1000 genomes]
rs331190	0.87[EUR][1000 genomes]
rs331199	0.82[EUR][1000 genomes]
rs409361	0.82[EUR][1000 genomes]
rs432141	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs453354	0.85[EUR][1000 genomes]
rs531125	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6800782	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78905800-78916200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:78907400-78916800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:78907600-78912600	Weak transcription	NHDF-Ad	bronchial
4	chr3:78907600-78920200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:78907800-78916200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:78908200-78912400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:78908400-78912000	Weak transcription	HepG2	liver

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