Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12330873	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs167944	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17016573	1.00[JPT][hapmap]
rs17016593	1.00[JPT][hapmap]
rs331133	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs57657065	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61270372	1.00[ASN][1000 genomes]
rs61490942	1.00[ASN][1000 genomes]
rs72894427	1.00[EUR][1000 genomes]
rs72894434	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894439	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894449	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894451	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894453	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894457	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894459	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894460	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894461	1.00[ASN][1000 genomes]
rs72894463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894464	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894467	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894474	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894482	1.00[ASN][1000 genomes]
rs72894501	1.00[ASN][1000 genomes]
rs72896405	1.00[ASN][1000 genomes]
rs72896408	1.00[ASN][1000 genomes]
rs9876637	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877019	chr3:78808850-78877217	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv432459	chr3:78819310-78874310	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78851400-78880400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:78854200-78872600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:78854400-78871200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:78855400-78872600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:78860200-78871600	Weak transcription	HepG2	liver
6	chr3:78860800-78869600	Weak transcription	Fetal Brain Male	brain
7	chr3:78861000-78867600	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:78861000-78872600	Weak transcription	Brain Anterior Caudate	brain
9	chr3:78861600-78867400	Weak transcription	Fetal Stomach	stomach
10	chr3:78861800-78869800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:78862400-78869600	Weak transcription	Fetal Lung	lung
12	chr3:78864800-78868200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:78864800-78868800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:78865000-78866000	Enhancers	Brain Hippocampus Middle	brain
15	chr3:78865400-78868200	Weak transcription	Brain Substantia Nigra	brain
16	chr3:78865400-78869600	Weak transcription	Fetal Heart	heart

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