Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs333501	1.00[EUR][1000 genomes]
rs57657065	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61270372	0.85[AMR][1000 genomes]
rs61490942	0.85[AMR][1000 genomes]
rs72894434	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894439	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894449	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894451	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894453	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894457	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894459	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894460	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894461	1.00[AMR][1000 genomes]
rs72894463	1.00[EUR][1000 genomes]
rs72894464	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894471	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894474	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894482	1.00[AMR][1000 genomes]
rs72894501	0.85[AMR][1000 genomes]
rs72896405	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72896408	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877019	chr3:78808850-78877217	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv432459	chr3:78819310-78874310	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78841400-78851600	Weak transcription	Brain Anterior Caudate	brain
2	chr3:78841600-78850800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:78843800-78850800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:78844200-78852800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:78844200-78853600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:78844400-78854000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:78846600-78850800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:78846600-78850800	Weak transcription	Fetal Lung	lung
9	chr3:78846600-78851000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:78846800-78851200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:78846800-78851200	Weak transcription	Primary T cells from cord blood	blood
12	chr3:78848400-78851400	Weak transcription	Brain Angular Gyrus	brain
13	chr3:78849200-78851200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:78850200-78852600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr3:78850600-78851000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr3:78850600-78852800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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