The 2.0 version of rSNPBase

Variant report

Variant rs33380
Chromosome Location chr5:142708469-142708470
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:142658400-142714800 Weak transcription Esophagus oesophagus
2 chr5:142692400-142710600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr5:142693200-142714400 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr5:142693400-142721000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr5:142693800-142747400 Weak transcription Fetal Muscle Trunk muscle
6 chr5:142697200-142714600 Weak transcription Placenta Amnion Placenta Amnion
7 chr5:142697200-142720400 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr5:142697800-142711400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr5:142698200-142709200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr5:142699000-142720600 Weak transcription Hela-S3 cervix
11 chr5:142699200-142721400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr5:142699600-142709400 Weak transcription NHLF lung
13 chr5:142699600-142711200 Weak transcription NHDF-Ad bronchial
14 chr5:142699600-142714400 Weak transcription Osteobl bone
15 chr5:142699600-142715800 Weak transcription Brain Cingulate Gyrus brain
16 chr5:142699600-142718600 Weak transcription Gastric stomach
17 chr5:142699600-142720200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr5:142700200-142711200 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr5:142701200-142714400 Weak transcription Fetal Heart heart
20 chr5:142702000-142725800 Weak transcription Aorta Aorta
21 chr5:142702400-142711200 Weak transcription Pancreatic Islets Pancreatic Islet
22 chr5:142703000-142709400 Weak transcription Brain Anterior Caudate brain
23 chr5:142703000-142711200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr5:142703000-142711200 Weak transcription Muscle Satellite Cultured Cells --
25 chr5:142703000-142727200 Weak transcription HSMM muscle
26 chr5:142703800-142718600 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr5:142704000-142709400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr5:142704200-142709600 Weak transcription Brain Substantia Nigra brain
29 chr5:142704200-142728800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr5:142704400-142717400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr5:142705200-142725600 Weak transcription Primary neutrophils fromperipheralblood blood
32 chr5:142705800-142722400 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr5:142706400-142709000 Enhancers Primary T helper cells fromperipheralblood blood
34 chr5:142706400-142710800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
35 chr5:142706600-142708800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
36 chr5:142706600-142709200 Enhancers Skeletal Muscle Male skeletal muscle
37 chr5:142706800-142709200 Enhancers Primary T helper cells PMA-I stimulated --
38 chr5:142707000-142708600 Enhancers Skeletal Muscle Female skeletal muscle
39 chr5:142707000-142715800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
40 chr5:142707200-142708600 ZNF genes & repeats Fetal Intestine Small intestine
41 chr5:142707200-142709000 ZNF genes & repeats Primary B cells from cord blood blood
42 chr5:142707200-142709000 Enhancers Psoas Muscle Psoas
43 chr5:142707200-142709000 ZNF genes & repeats Thymus Thymus
44 chr5:142707200-142709000 Strong transcription Monocytes-CD14+_RO01746 blood
45 chr5:142707400-142709000 ZNF genes & repeats Primary T cells from cord blood blood
46 chr5:142707400-142709000 Enhancers Ovary ovary
47 chr5:142707400-142709600 Enhancers Adipose Nuclei Adipose
48 chr5:142707400-142710000 Weak transcription Primary T regulatory cells fromperipheralblood blood
49 chr5:142707400-142710200 ZNF genes & repeats Dnd41 blood
50 chr5:142707400-142734800 Weak transcription Placenta Placenta

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Last update: Aug 31, 2015