Variant report

Variant	rs334035
Chromosome Location	chr2:179089385-179089386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:179081675..179083838-chr2:179087556..179089889,2	MCF-7	breast:
2	chr2:179048964..179050536-chr2:179089183..179092012,2	K562	blood:
3	chr2:179082696..179084962-chr2:179087856..179090236,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10197166	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10930827	0.87[JPT][hapmap]
rs13403689	0.96[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs186736	0.86[JPT][hapmap]
rs2366157	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs333996	0.87[JPT][hapmap]
rs334002	0.80[JPT][hapmap]
rs334005	0.87[JPT][hapmap]
rs334007	0.87[JPT][hapmap]
rs334014	0.80[JPT][hapmap]
rs334017	0.87[JPT][hapmap]
rs334024	0.83[JPT][hapmap]
rs334028	0.82[JPT][hapmap]
rs334037	0.82[JPT][hapmap]
rs334040	0.86[JPT][hapmap]
rs334042	0.86[JPT][hapmap]
rs334045	0.86[JPT][hapmap]
rs334102	0.93[JPT][hapmap]
rs334103	0.93[JPT][hapmap]
rs334110	0.93[JPT][hapmap]
rs6719178	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6747743	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73028670	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73028675	0.86[ASN][1000 genomes]
rs7419749	0.87[JPT][hapmap]
rs7581504	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs9989738	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1011423	chr2:179084407-179166160	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179077200-179089600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:179078600-179091800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:179079000-179101200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:179084600-179094800	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:179085800-179090600	Weak transcription	Aorta	Aorta
6	chr2:179086800-179089400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:179086800-179091800	Weak transcription	HMEC	breast
8	chr2:179087800-179090600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:179088000-179091000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:179088000-179091000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:179088200-179090000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:179088400-179089400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:179088600-179089600	Enhancers	Psoas Muscle	Psoas
14	chr2:179088600-179090400	Enhancers	Osteobl	bone
15	chr2:179088800-179089400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:179088800-179090200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr2:179088800-179095800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:179089000-179089800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr2:179089000-179091000	Weak transcription	Pancreas	Pancrea
20	chr2:179089000-179092400	Enhancers	NH-A	brain
21	chr2:179089200-179092600	Enhancers	HSMM	muscle

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