Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs101266	0.86[ASW][hapmap];0.81[JPT][hapmap]
rs10197166	0.87[JPT][hapmap]
rs10930827	0.90[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap]
rs12185670	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs13029471	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13403689	0.81[JPT][hapmap]
rs147180	0.86[ASW][hapmap];0.81[JPT][hapmap]
rs186736	0.87[JPT][hapmap]
rs2366157	0.87[JPT][hapmap]
rs333997	0.81[JPT][hapmap]
rs334014	0.86[ASW][hapmap]
rs334024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs334028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs334029	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs334035	0.87[JPT][hapmap]
rs334037	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs334041	0.81[JPT][hapmap]
rs334043	0.81[JPT][hapmap]
rs334044	0.81[JPT][hapmap]
rs334102	0.81[JPT][hapmap]
rs334103	0.81[JPT][hapmap]
rs334110	0.81[JPT][hapmap]
rs551368	0.86[ASW][hapmap];0.81[JPT][hapmap]
rs6719178	0.87[JPT][hapmap]
rs7581504	0.81[JPT][hapmap]
rs9989738	0.86[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179060800-179076200	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:179068800-179072400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr2:179070000-179076400	Weak transcription	Right Atrium	heart
4	chr2:179070200-179075400	Weak transcription	Psoas Muscle	Psoas
5	chr2:179070200-179075800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:179070200-179076200	Weak transcription	Brain Angular Gyrus	brain
7	chr2:179070200-179076400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr2:179070400-179075800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:179070600-179075800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:179070600-179076000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:179070800-179077200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:179071000-179075200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:179071000-179076600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:179071200-179072000	Enhancers	Osteobl	bone
15	chr2:179071200-179075800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr2:179071400-179078000	Weak transcription	HMEC	breast
17	chr2:179071600-179072000	Enhancers	NH-A	brain
18	chr2:179071800-179072000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:179071800-179072000	Enhancers	K562	blood

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