Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1020011	1.00[EUR][1000 genomes]
rs11686720	1.00[EUR][1000 genomes]
rs12613904	1.00[EUR][1000 genomes]
rs1369518	1.00[EUR][1000 genomes]
rs1527288	1.00[EUR][1000 genomes]
rs2117739	1.00[EUR][1000 genomes]
rs2164330	1.00[EUR][1000 genomes]
rs2366352	1.00[EUR][1000 genomes]
rs2886653	1.00[EUR][1000 genomes]
rs334106	1.00[EUR][1000 genomes]
rs379552	1.00[EUR][1000 genomes]
rs6433711	1.00[EUR][1000 genomes]
rs6706521	1.00[EUR][1000 genomes]
rs6729893	1.00[EUR][1000 genomes]
rs6741013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6761951	1.00[EUR][1000 genomes]
rs9288012	1.00[EUR][1000 genomes]
rs9288013	1.00[EUR][1000 genomes]
rs934567	1.00[EUR][1000 genomes]
rs959775	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179016200-179019200	Enhancers	Fetal Intestine Large	intestine
2	chr2:179016400-179018600	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr2:179016800-179017400	Enhancers	Adipose Nuclei	Adipose
4	chr2:179016800-179017600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:179016800-179017600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:179016800-179018200	Enhancers	HepG2	liver
7	chr2:179016800-179018600	Enhancers	Duodenum Mucosa	Duodenum
8	chr2:179016800-179019400	Enhancers	Fetal Intestine Small	intestine
9	chr2:179017000-179017400	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr2:179017000-179018400	Enhancers	Fetal Lung	lung
11	chr2:179017000-179018400	Weak transcription	Gastric	stomach
12	chr2:179017200-179017400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:179017200-179017400	Enhancers	Liver	Liver
14	chr2:179017200-179018000	Enhancers	Pancreatic Islets	Pancreatic Islet

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