Variant report
| Variant | rs934567 |
|---|---|
| Chromosome Location | chr2:178867682-178867683 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:178867619..178869782-chr2:178885408..178887281,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1020011 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11686720 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12613904 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1358300 | 1.00[EUR][1000 genomes] |
| rs1369518 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1527288 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2015183 | 0.89[AFR][1000 genomes] |
| rs2117739 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2164330 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2366352 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2886653 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs334049 | 1.00[EUR][1000 genomes] |
| rs334106 | 1.00[EUR][1000 genomes] |
| rs379552 | 1.00[EUR][1000 genomes] |
| rs6433711 | 1.00[EUR][1000 genomes] |
| rs6706521 | 1.00[EUR][1000 genomes] |
| rs6726477 | 0.89[AFR][1000 genomes] |
| rs6729893 | 1.00[EUR][1000 genomes] |
| rs6741013 | 1.00[EUR][1000 genomes] |
| rs6761951 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73038286 | 1.00[EUR][1000 genomes] |
| rs73038287 | 1.00[EUR][1000 genomes] |
| rs9288012 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9288013 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs959775 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533377 | chr2:178718801-178963463 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007579 | chr2:178729330-178890946 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv875451 | chr2:178748294-178953409 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv998304 | chr2:178756380-178924378 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv536056 | chr2:178756380-178924378 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:178863600-178873400 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
