Variant report

Variant	rs336242
Chromosome Location	chr13:110492672-110492673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs170860	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1999710	0.88[EUR][1000 genomes]
rs336230	0.82[AMR][1000 genomes]
rs336238	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs336246	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs336247	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4771653	0.82[EUR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110488400-110496200	Weak transcription	Aorta	Aorta
2	chr13:110489600-110497200	Weak transcription	Stomach Mucosa	stomach
3	chr13:110489800-110492800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:110491000-110494800	Enhancers	HSMM	muscle
5	chr13:110491600-110493600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:110491600-110493800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:110492000-110493600	Enhancers	Dnd41	blood
8	chr13:110492200-110493200	Enhancers	NHDF-Ad	bronchial
9	chr13:110492400-110492800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr13:110492400-110492800	Enhancers	Fetal Muscle Trunk	muscle
11	chr13:110492400-110493200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:110492400-110493200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:110492400-110493200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:110492400-110493400	Enhancers	Hela-S3	cervix
15	chr13:110492400-110493600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:110492400-110493600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr13:110492400-110493600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:110492400-110493600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr13:110492400-110493600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr13:110492400-110493600	Enhancers	NHEK	skin
21	chr13:110492400-110493800	Enhancers	HMEC	breast
22	chr13:110492400-110493800	Enhancers	NH-A	brain
23	chr13:110492600-110492800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
24	chr13:110492600-110492800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr13:110492600-110492800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr13:110492600-110492800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr13:110492600-110492800	Bivalent Enhancer	Left Ventricle	heart
28	chr13:110492600-110492800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr13:110492600-110493000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr13:110492600-110493000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr13:110492600-110493000	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr13:110492600-110493000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr13:110492600-110493000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr13:110492600-110493000	Enhancers	Pancreas	Pancrea
35	chr13:110492600-110493000	Enhancers	Right Ventricle	heart
36	chr13:110492600-110493000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr13:110492600-110493000	Flanking Active TSS	HSMMtube	muscle
38	chr13:110492600-110493200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr13:110492600-110493200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr13:110492600-110493200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr13:110492600-110493200	Enhancers	Placenta Amnion	Placenta Amnion
42	chr13:110492600-110493200	Enhancers	Right Atrium	heart
43	chr13:110492600-110493400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr13:110492600-110493400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr13:110492600-110493400	Enhancers	NHLF	lung
46	chr13:110492600-110493600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr13:110492600-110493600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr13:110492600-110493600	Enhancers	Osteobl	bone

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