Variant report

Variant	rs170860
Chromosome Location	chr13:110470932-110470933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110435545..110437326-chr13:110470827..110473616,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs336229	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs336230	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs336231	0.82[ASN][1000 genomes]
rs336238	0.87[EUR][1000 genomes]
rs336242	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs336246	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs336247	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4238270	0.82[ASN][1000 genomes]
rs4771653	0.81[ASN][1000 genomes]
rs752946	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9521523	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110468200-110471000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr13:110468400-110471200	Enhancers	HMEC	breast
3	chr13:110468600-110471200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:110468800-110471200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:110468800-110471200	Enhancers	NH-A	brain
6	chr13:110468800-110471400	Enhancers	NHEK	skin
7	chr13:110468800-110471600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:110469400-110471000	Flanking Active TSS	HSMM	muscle
9	chr13:110469600-110471200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:110469600-110471200	Enhancers	NHDF-Ad	bronchial
11	chr13:110469800-110471200	Enhancers	Fetal Muscle Trunk	muscle
12	chr13:110470000-110471000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr13:110470000-110471600	Enhancers	Fetal Muscle Leg	muscle
14	chr13:110470000-110473000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:110470200-110471600	Enhancers	Dnd41	blood
16	chr13:110470200-110473400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr13:110470400-110471200	Enhancers	Fetal Stomach	stomach
18	chr13:110470600-110471200	Enhancers	Esophagus	oesophagus
19	chr13:110470600-110471400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr13:110470800-110471000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:110470800-110471000	Enhancers	Pancreas	Pancrea
22	chr13:110470800-110472000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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