Variant report

Variant	rs4238270
Chromosome Location	chr13:110470028-110470029
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs170860	0.82[ASN][1000 genomes]
rs1999710	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs336229	0.82[ASN][1000 genomes]
rs336231	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs336246	0.82[EUR][1000 genomes]
rs4771653	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs752946	0.83[ASN][1000 genomes]
rs9521523	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110468200-110470400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:110468200-110470400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:110468200-110471000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr13:110468400-110470200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:110468400-110470400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:110468400-110471200	Enhancers	HMEC	breast
7	chr13:110468600-110470400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:110468600-110471200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:110468800-110470200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:110468800-110470200	Enhancers	HSMMtube	muscle
11	chr13:110468800-110470400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:110468800-110471200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:110468800-110471200	Enhancers	NH-A	brain
14	chr13:110468800-110471400	Enhancers	NHEK	skin
15	chr13:110468800-110471600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr13:110469000-110470200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr13:110469000-110470200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:110469200-110470200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr13:110469200-110470200	Enhancers	Liver	Liver
20	chr13:110469200-110470200	Weak transcription	Dnd41	blood
21	chr13:110469200-110470600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr13:110469400-110470400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr13:110469400-110471000	Flanking Active TSS	HSMM	muscle
24	chr13:110469600-110470200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr13:110469600-110470600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr13:110469600-110471200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr13:110469600-110471200	Enhancers	NHDF-Ad	bronchial
28	chr13:110469800-110471200	Enhancers	Fetal Muscle Trunk	muscle
29	chr13:110470000-110470800	Weak transcription	Pancreas	Pancrea
30	chr13:110470000-110471000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr13:110470000-110471600	Enhancers	Fetal Muscle Leg	muscle
32	chr13:110470000-110473000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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